PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15447s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 359aa    MW: 39681.8 Da    PI: 7.2896
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15447s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.67.9e-33732012115
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg 88 
                            g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl +ak++i+el+ ++ s+++++  ++++s  + ++   +
  Araha.15447s0008.1.p  73 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELPPLPISPENFSifNHHHSFLNLGQRPGQ 161
                           689*************************************************************9999988887666666665544433 PP

                   TCP  89 .............kaaksaakskksqksaasalnlakesr 115
                                        ++++++  + +++++ ++   +a++++
  Araha.15447s0008.1.p 162 dptqlgfkingcvEESTTTSREANNKEKGENDVVFANNHH 201
                           5777778887877333333333333333333344444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.31475133IPR017887Transcription factor TCP subgroup
PfamPF036347.0E-2975180IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNIVSWKDAN DEVSGGATTR REGEVEEDQE EAEVRATSGK TVIKKPPTSI SSSSSSSWMK  60
SKDPRIVRVS RAFGGKDRHS KVCTLRGLRD RRVRLSVPTA IQLYDLQERL GVDQPSKAVD  120
WLLDAAKEEI DELPPLPISP ENFSIFNHHH SFLNLGQRPG QDPTQLGFKI NGCVEESTTT  180
SREANNKEKG ENDVVFANNH HVGSYGTYHN MEHHHHHHQH LSLQADYHNH QHQLHSLVPF  240
PSQILVCPMT TSTTATTIQS LFPSSSSAGS GTMETLDPRQ MVSHFQMPIM GNSSSSSSQN  300
ISTLYSLLHG SNSNNGGRDI NNRMSSVQFN RANSTTTANM SRHLGSESSR SRGSDHHM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144650.0AB014465.1 Arabidopsis thaliana mRNA for TFPD, complete cds.
GenBankATAC0097550.0AC009755.7 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence, complete sequence.
GenBankATAC0116640.0AC011664.10 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence.
GenBankBT0019820.0BT001982.1 Arabidopsis thaliana expressed protein (At3g02150) mRNA, complete cds.
GenBankBT0088390.0BT008839.1 Arabidopsis thaliana At3g02156 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882210.10.0hypothetical protein ARALYDRAFT_477445
SwissprotQ9S7W50.0TCP13_ARATH; Transcription factor TCP13
TrEMBLD7LAL30.0D7LAL3_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.3__146__AT3G02150.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91342637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.20.0plastid transcription factor 1